scientificrcalef/magneton-databiologyproteinsprotein-representationswissprotinterprodsspbioinformaticsmachine-learningjsonlmit-license

Magneton: Substructure-Aware Protein Representation Learning Dataset

Name: Magneton: Substructure-Aware Protein Representation Learning Dataset
Creator: DataBazaar
Keywords: rcalef/magneton-data, biology, proteins, protein-representation, swissprot, interpro, dssp, bioinformatics, machine-learning, jsonl, mit-license

About this data

530,601 SwissProt proteins with DSSP secondary structure and InterPro 103.0 substructure annotations, sharded JSONL format. For training/evaluating protein representation learning models.

Schema

Name	Type	Description
uniprot_id	VARCHAR	SwissProt accession identifier (e.g., Q8CC14)
kb_id	VARCHAR	Knowledge base entry identifier in format sp\|accession\|name
name	VARCHAR	SwissProt entry name (protein ID code, e.g., F216B_MOUSE)
length	BIGINT	Protein sequence length in amino acids
parsed_entries	BIGINT	Number of successfully parsed InterPro annotations
total_entries	BIGINT	Total number of InterPro annotations in source data
entries	STRUCT(id VARCHAR, element_type VARCHAR, match_id VARCHAR, element_name VARCHAR, representative BOOLEAN, positions BIGINT[][])[]	InterPro 103.0 domain/family/motif annotations with ID, type, match ID, name, representative flag, and residue position ranges
secondary_structs	STRUCT(dssp_type BIGINT, "start" BIGINT, "end" BIGINT)[]	Per-residue DSSP secondary structure assignments (type code, start position, end position)

Sample Data

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Seller: DataBazaar

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// Found: 2ad16e68-096b-495f-8c9f-c3f9a647fb43
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